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| author | Jari Vetoniemi <jari.vetoniemi@indooratlas.com> | 2020-03-16 18:49:26 +0900 |
|---|---|---|
| committer | Jari Vetoniemi <jari.vetoniemi@indooratlas.com> | 2020-03-30 00:39:06 +0900 |
| commit | fcbf63e62c627deae76c1b8cb8c0876c536ed811 (patch) | |
| tree | 64cb17de3f41a2b6fef2368028fbd00349946994 /jni/ruby/benchmark/bm_so_reverse_complement.rb | |
Fresh start
Diffstat (limited to 'jni/ruby/benchmark/bm_so_reverse_complement.rb')
| -rw-r--r-- | jni/ruby/benchmark/bm_so_reverse_complement.rb | 30 |
1 files changed, 30 insertions, 0 deletions
diff --git a/jni/ruby/benchmark/bm_so_reverse_complement.rb b/jni/ruby/benchmark/bm_so_reverse_complement.rb new file mode 100644 index 0000000..82ea666 --- /dev/null +++ b/jni/ruby/benchmark/bm_so_reverse_complement.rb @@ -0,0 +1,30 @@ +#!/usr/bin/ruby +# The Great Computer Language Shootout +# http://shootout.alioth.debian.org/ +# +# Contributed by Peter Bjarke Olsen +# Modified by Doug King + +seq=Array.new + +def revcomp(seq) + seq.reverse!.tr!('wsatugcyrkmbdhvnATUGCYRKMBDHVN','WSTAACGRYMKVHDBNTAACGRYMKVHDBN') + stringlen=seq.length + 0.step(stringlen-1,60) {|x| print seq.slice(x,60) , "\n"} +end + +input = open(File.join(File.dirname($0), 'fasta.output.2500000'), 'rb') + +while input.gets + if $_ =~ />/ + if seq.length != 0 + revcomp(seq.join) + seq=Array.new + end + puts $_ + else + $_.sub(/\n/,'') + seq.push $_ + end +end +revcomp(seq.join) |